----------------
Water Clustering
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Determination of conserved water positions based on clustering of oxygen atoms.

.. rubric:: Overview of WaterClustering class

.. autosummary::
    :nosignatures:

    ConservedWaterSearch.water_clustering.WaterClustering
    ConservedWaterSearch.water_clustering.WaterClustering.__init__
    ConservedWaterSearch.water_clustering.WaterClustering.run
    ConservedWaterSearch.water_clustering.WaterClustering.multi_stage_reclustering
    ConservedWaterSearch.water_clustering.WaterClustering.quick_multi_stage_reclustering
    ConservedWaterSearch.water_clustering.WaterClustering.single_clustering
    ConservedWaterSearch.water_clustering.WaterClustering.save_results
    ConservedWaterSearch.water_clustering.WaterClustering.restart_cluster
    ConservedWaterSearch.water_clustering.WaterClustering.read_and_set_water_clust_options
    ConservedWaterSearch.water_clustering.WaterClustering.create_from_file
    ConservedWaterSearch.water_clustering.WaterClustering.create_from_files_and_restart
    ConservedWaterSearch.water_clustering.WaterClustering.visualise_nglview
    ConservedWaterSearch.water_clustering.WaterClustering.visualise_pymol
    ConservedWaterSearch.water_clustering.WaterClustering.waterH1
    ConservedWaterSearch.water_clustering.WaterClustering.waterH2
    ConservedWaterSearch.water_clustering.WaterClustering.waterO
    ConservedWaterSearch.water_clustering.WaterClustering.water_type
    ConservedWaterSearch.water_clustering.WaterClustering.water_clusters


.. autoclass:: ConservedWaterSearch.water_clustering.WaterClustering
    :show-inheritance:
    :member-order: bysource
    :members: __init__, run, quick_multi_stage_reclustering, multi_stage_reclustering, single_clustering, save_results, read_and_set_water_clust_options, restart_cluster, create_from_file, create_from_files_and_restart, visualise_nglview, visualise_pymol, waterH1, waterH2, waterO, water_type, water_clusters